BVDV in commercial bovine serum...still?

by Dr. Ray Nims

One of the animal-derived materials (ADM) most commonly utilized for cell culture and for production of biologicals manufactured using cell cultures is bovine serum (most typically calf serum or fetal bovine serum). There is an inherent risk of introduction of adventitious contaminants (viruses and molllicutes) associated with the use of culture media containing serum. In fact, most of the viral contaminants that have been isolated from biologics bulk harvests (including REO type 2, Cache Valley virus, epizootic hemorrhagic disease virus, and vesivirus 2117) are believed to have been introduced via contaminated bovine serum. Another potential contaminant that may be introduced via bovine serum is the pestivirus bovine viral diarrhea virus (BVDV).

BVDV is a medium-sized (40-70 nm), enveloped, single-stranded RNA virus of the Flavivirus family. The regulatory requirements pertaining to the use of bovine materials for manufacturing biologics (9CFR113.47) contain specific instructions related to the detection of BVDV contamination. EMEA regulations require not only the testing of bovine sera for infectious BVDV, but also assessment of the presence of antibodies to BVDV. Neutralizing antibodies for BVDV are of concern since their presence could theoretically interfere with the detection of the virus in testing done for release of the serum. Although testing of bovine serum to be used for manufacturing biologicals is a regulatory expectation, experience has indicated that such testing is fraught with  false negative results. The relatively large volumes of serum that comprise a given batch are obtained by pooling large numbers of individal serum draws, and there is a chance of non-homogeneous contamination from a limited number of BVDV-infected draws.

How frequently has infectious BVDV been detected in commercially available bovine serum? What percentage of serum lots has been found to contain neutralizing antibodies to BVDV? Has BVDV genomic RNA invariably been found in bovine serum when tested by RT-PCR? These questions have been addressed by various authors over the past four decades.

Infectious BVDV continues to be detected in fetal bovine serum samples up to the present time. This reflects the fact that BVDV is distributed in cattle worldwide, subclinical infections with non-cytopathic BVDV are common in herds, and large serum pools are likely to be non-homogeneously contaminated with BVDV-infected serum. Over the past four decades, 667 lots of commercial fetal bovine serum have been examined for the presence of infectious BVDV in studies reported in the literature. Positive results have been reported for 29% of the lots examined, although the variability in frequency of detection has been quite large, as indicated by the range in the values that have been obtained in the various studies. The percentage of isolates comprising non-cytopathic BVDV has ranged from 98-100%, reflecting the continuing predominance of this variant over the cytopathic strains in cattle herds.

The frequency of detection of neutralizing anti-BVDV antibodies has ranged from 61% to 98% of fetal bovine serum lots. The overall number of commercial fetal bovine serum lots that have been evaluated for neutralizing antibodies to BVDV is 182, with antibodies being detected in 70% of these lots. 

Genomic RNA for BVDV has been detected in 79% of the 155 commercial fetal bovine serum lots that have been evaluated since 1996, when the RT-PCR methodology was initially applied to this question.

The risk of introducing infectious BVDV through contaminated FBS may be mitigated through gamma-irradiation of the FBS. BVDV is relatively sensitive to inactivation by this treatment. It is therefore unusual to detect infectious BVDV in gamma-irradiated serum, though in one case in the literature, a single lot of irradiated serum out of 9 lots tested contained infectious BVDV. This inactivation strategy used to mitigate risk of introducing infectious BVDV is not expected to reduce the frequency of detecting neturalizing anti-BVDV antibodies or genomic RNA for BVDV in the treated serum lots.

See Nims and Plavsic. The Pervasiveness of bovine viral diarrhea virus in commercial bovine serum.  BioProcessing Journal Winter 2012 /2013, 19-26 for the individual study results used to prepare the table shown above. 

UV-C versus small, non-enveloped viruses

By Dr. Ray Nims

Small, non-enveloped viruses (especially the circoviruses, parvoviruses, picornaviruses, caliciviruses, and polyomaviruses) and bacteriophage with similar characteristics represent a special challenge to the biologics industry.

In fact, contamination events have occurred with each of these virus families; in some cases more than once. Within the Circoviridae, the primary concern has been the porcine circovirus discovered in rotavirus vaccine. At least four contamination events involving the parvovirus, mouse minute virus, have been reported. The calicivirus vesivirus 2117 has contaminated biologics manufacturing processes on at least two occasions. The picornaviruses are a threat which has yet to be realized in the manufacturing context; but a viral safety test conducted for a biologics cell bank was the scene of a contamination with equine rhinitis A virus. The polyomavirus SV40 was found to have survived the formaldehyde inactivation used in the preparation of polio vaccines and therefore made its way into the doses of vaccine delivered to millions of individuals during the decade between 1955 and 1965 (being born in 1952, it is possible that the author received such tainted vaccine!).

The contamination events described above are, at least in part, a reflection of the ability of these viruses to withstand conditions that would lead to inactivation of other types of viruses. Inactivation strategies that are typically employed for viral safety include chemical (low pH, high pH, disinfectants, solvents, detergents, etc.) and physical (heat, irradiation, pressure, etc.) means. In a previous posting, the efficacy of gamma irradiation for inactivating various types of viruses within frozen animal serum was discussed. The use of UV-A in combination with riboflavin has also been discussed previously.

It is perhaps fortunate that the efficacies of different inactivation approaches are in many cases complementary. For instance, it appears that the efficacy of gamma irradiation for inactivation of viruses decreases as viral particle size decreases (although this relationship is not strictly linear). The outcome of this is that gamma irradiation does not appear to be particularly effective for inactivating small, non enveloped viruses from the circovirus, parvovirus, and polyomavirus families. On the other hand, ultraviolet radiation in the C range (254 nm is the most commonly employed wavelength) appears to be more effective for the inactivation of smaller viruses than for larger viruses (or bacteria).

The table below is a compilation of the UV-C inactivation constants (K, defined as the log₁₀ reduction in titer per mJ/cm² fluency) for various families of small, non-enveloped viruses. These K values represent inactivation of the viruses in a variety of matrices, ranging from water to protein-containing matrices such as albumin or complete culture medium). These results suggest that UV-C irradiation may be a viable approach for inactivating many of these problem viruses in raw materials or process intermediates used in biologics manufacture.

references for K values: * Lytle and Sagripanti 2005, ¶ Kowalski et al. 2009; † Maier 2007. The other values are the mean K values assembled by the author from the inactivation literature.

The one exception appears to be the polyomaviruses, which appear to be relatively resistant to the inactivating effects both of gamma irradiation and UV-C irradiation. This family of viruses may best be inactivated using high-temperature short-time treatment (HTST), though the efficacy of this approach for the polyomaviruses has yet to be demonstrated empirically.

The inactivation literature for circoviruses

by Dr. Ray Nims

The Circoviridae family of viruses represent an extreme case for small, non-enveloped viruses. We have posted previously that the latter group constitutes a high risk for manufacturers of biologicals due to the difficulty of eradicating the viruses from raw materials or from a contaminated facility.  At 17-25 nm particle size, the circoviruses are among the smallest of the animal viruses. These viruses represent more of an economic threat than a threat to human health. The porcine circoviruses (PCV-1 and PCV-2) and the chicken anemia virus are well known examples of the circoviruses and these have been studied extensively due to their impact on the swine and poultry industries. So why care about the circoviruses in the biologics industry?

We begin being concerned about porcine circoviruses in the context of xenotransplantation of porcine tissues (e.g., islet cells) into humans. The worry was that a porcine circovirus might be transmitted to a patient via the porcine donor tissue. More recently, PCV genomic sequences were discovered in rotavirus vaccines manufactured by GlaxoSmithKline and Merck. The presence of the genomic material was attributed to the use of porcine trypsin during the culture of the cell substrates in which the vaccines were manufactured (see previous post).

As a result of the heightened awareness of the contamination threat posed by the porcine circoviruses, infectivity assays for these viruses are now being offered at contract testing organizations (e.g., BioReliance, MICROBIOTEST, and WuXi Apptec), for raw material testing, cleaning efficacy testing, and for evaluating the clearance of the circoviruses by purification processes. As might be expected based on our experience with other small, non-enveloped viruses, inactivation approaches that are effective against many larger non-enveloped  or enveloped viruses have little efficacy for the circoviruses.

So how much do we actually know about the inactivation of  circoviruses? The literature on the subject is fairly extensive for PCV-2 and for chicken anemia virus, if one is willing to spend time digging deeply. I have done the digging, and have assembled the literature into the following categories of inactivants: heat, irradiation, and disinfectants/chemicals. Keep in mind that the inactivation potential of the physical or chemical agents depends greatly upon the matrix in which the virus is present as well as the temperature and contact time with inactivant. The matrices evaluated varied for the studies described below, and the reader is directed to the individual papers for this critical detail. In addition, some variability in results may be expected because of the relative difficulty in assaying infectivity of the circoviruses.

A number of studies on the thermal stability of the circoviruses have been published. In general, it appears that 15 or more minutes of exposure to wet heat (heating of viruses spiked into solutions) at temperatures ≥80 ◦C should provide extensive inactivation (3-5 log₁₀) of circoviruses. Dry heat (heating of freeze-dried virus and, by implication, viruses on the surfaces of coupon materials) appears to be much less effective, resulting in <1.5 log₁₀ inactivation even at temperatures as high as 120 ◦C . The results of at least one investigator suggest that a temperature of 95 ◦C will be sufficient for high temperature short time (HTST) treatment for mitigating the risk of introducing a circovirus in a process solution.

A number of studies on the inactivation of the circoviruses by disinfectants and other chemicals have appeared in the literature, reflecting the relatively great economic threat of the circoviruses to the swine, poultry, and exotic bird industries. While many of the chemicals/disinfectants had little efficacy for inactivation of the circoviruses (as might be expected for a non-enveloped virus), certain treatments appear to have been highly effective. These included the following: a) glutaraldehyde at 1% or 2% and 10 or more minutes contact time; b) sodium hypochlorite at 6% and 10 or more minutes contact time; c) sodium hydroxide  at 0.1 N or greater; d) Roccal® D Plus at 0.5% and 10 minutes contact time; e) Virkon® S at 1% and 10 minutes contact time; f) β-propiolactone at 0.4% and 24 hours contact time; and g) formaldehyde at 10% and 2 hours contact time. Variable results were obtained for the iodine-containing disinfectants. These ranged from <1.0 log₁₀ inactivation for iodine (10%; 30 minutes contact time; 20 ◦C) to ≥5.5 log₁₀ for Cleanap® (1%; 2 hours contact time; 37 ◦C). A third study involving an iodine-containing disinfectant, FAM®30 (Biocide30) used at 1% or 2%; 30 minutes contact time, and 10 ◦C temperature demonstrated ≥3.5 log₁₀ inactivation.

The literature on inactivation of circoviruses by irradiation is scant, to say the least. Plavsic and Bolin showed that gamma irradiation of PCV-2-spiked fetal bovine serum at the radiation doses normally employed for serum treatment (30 and 45 kGy) resulted in ≤1.0 log₁₀ reduction in virus titer. Gamma irradiation (at the doses normally used) appears to be relatively ineffective for inactivating the very smallest of the viruses (parvoviruses and circoviruses) in serum so this result is perhaps not surprising. One approach that offers hope for inactivation of circoviruses is ultraviolet radiation (specifically UV-C) treatment, as this technology appears to be effective for smaller non-enveloped viruses such as the parvoviruses and caliciviruses. I expect that studies to demonstrate efficacy of UV-C for inactivating circoviruses will be performed in the near future.

In summary, there is ample evidence in the literature that effective inactivation approaches exist for the circoviruses. Careful selection of inactivation technologies that is based on the body of evidence accumulated by workers in the swine and poultry industries should enable appropriate risk mitigation and facility cleaning strategies to be adopted in the biologics industry.

<This material was excerpted in part from Nims and Plavsic, Bioprocessing J, 2012; 11:4-10>

Ridding serum of viruses with gamma irradiation: part 2

by Dr. Ray Nims

In a previous posting, we described the susceptibility of viruses from various families to inactivation in frozen serum treated with gamma irradiation (data from the literature). Gamma irradiation is a commonly employed risk mitigation strategy for biopharmaceutical manufacture, and indeed the European Agency for the Evaluation of Medicinal Products in its Note for guidance on the use of bovine serum states that some form of inactivation (such as gamma irradiation) is expected. The use of non-treated serum in the production of biologics for human use must be justified, due to the potential for introducing a viral contaminant through use of this animal-derived material.

But how effective is this particular risk mitigation strategy? To answer this, we expressed the susceptibility to inactivation by gamma radiation for a series of 16 viruses in terms of log10 reduction in titer per kiloGray (kGy) of gamma radiation. With this value in hand, one may easily calculate the log10 reduction in titer of a given virus which might be expected following irradiation of frozen serum at any given kGy dose (serum is typically irradiated at a dose of 25-40 kGy).

The next step is to try to understand the results obtain with this relatively limited series of viruses, so that we may extrapolate the results to other viruses. If we take a look at the viral characteristics that might confer susceptibility to inactivation by gamma irradiation, will we find what we are looking for?

Viral characteristics that have been postulated to contribute to susceptibility or resistance to inactivation by gamma irradiation include: 1) radiation target size (genome size, particle size, genome shape, segmentation of the genome); 2) strandedness (in double stranded genomes the genomic information is recorded in duplicate, so loss of information on one strand may not be as damaging as it would be in the case of a single stranded genome); 3) presence or absence of a lipid envelope (non-enveloped viruses are resistant to a variety of chemical and physical inactivation approaches); and 4) genome type (RNA vs. DNA). The characteristics for our series of 16 viruses are displayed in the following table (click on table to enlarge).

For evaluating the contribution of radiation target size, we are able to make use of quantitative values available for each virus for genome size (in nucleotides) and particle size (in nm). Plotting genome size vs. log10 reduction in titer per kGy yields the results shown below. The coefficient of determination obtained is just 0.32, suggesting that factors other than (or in addition to!) genome size in nucleotides must be important..

A somewhat better concordance is obtained between particle size and log10 reduction in titer per kGy as shown below. The fit line in this case is non-linear, with a coefficient of determination of 0.60.

The contributions of genome type (RNA vs. DNA), genome strandedness, and lipid envelope (present or absent) to susceptibility to inactivation by gamma irradiation appear to be minimal, within this limited series of viruses. As a result, we are left with the conclusion that the most clear, albeit incomplete, determinant of susceptibility to inactivation by gamma irradiation appears to be particle size. This probably explains the resistance to inactivation displayed by the extremely small viruses such as circoviruses, parvoviruses, and caliciviruses. It is less clear why the polyomaviruses (e.g., SV-40 at 40-50 nm) are so resistant to gamma irradiation while certain of the picornaviruses (25-30 nm) are less resistant to inactivation. More work in this area is needed to better understand all of the factors that contribute to susceptibility to gamma radiation inactivation in viruses and bacteriophage.

< This information was excerpted in part from Nims, et al. Biologicals (2011) >

Ridding serum of viruses with gamma irradiation: part 1

by Dr. Ray Nims

Blood serum, while at times required as a medium component for cell growth in vitro, is an animal-derived material that can introduce contaminating viruses such as Cache Valley virus, REO virus, vesivirus, and epizootic hemorrhagic disease virusinto a biological product. If animal serum must be used in upstream manufacturing processes, the risk of introducing a virus may be mitigated by gamma irradiation of the frozen serum prior to use. How effective is this treatment, and against which viruses?

To answer this question, I have surveyed the literature from the past two decades. A number of investigations have been conducted and the results are in the public domain. The most useful of these studies have examined the dose-response relationships for viral inactivation (rendering of the virus as non-infectious) by gamma irradiation.

In the table below, I have assembled the results obtained for 7 viruses, including four that might be expected to be found in bovine serum: (bovine viral diarrhea virus [BVDV], infectious bovine rhinotracheitis virus [IBR], respiratory-enteric orphan virus [REO virus], and parainfluenza type 3 virus [PI3]). The other three (canine adenovirus, porcine parvovirus [PPV], and mouse minute virus [MMV]), while perhaps not expected to be found in bovine serum, have been studied as model viruses for the adenovirus and parvovirus families (click on table to enlarge).

The efficacy of gamma irradiation for viral inactivation is reported as log10 reduction in titer per kGy, rather than the more commonly employed D10 (Mrad dose required to reduce the titer by 1 log10), as I find the former value to be more useful. To estimate the effectiveness of a given dose of gamma radiation for inactivation of a virus, just multiply the dose in kGy by the log10 reduction in titer per kGy value from the table. The result is the number of logs of inactivation estimated to be achieved for that virus at that radiation dose.

These data tell us that the mid- to large-sized viruses BVDV, IBR, PI3, REO, and CAV should be readily inactivated at the gamma radiation doses normally applied to frozen serum for risk mitigation (25-45 kGy). On the other hand, the two parvoviruses, PPV and MMV, are more difficult to inactivate, presumably due to their small size. Parvoviruses are often used to challenge viral removal and inactivation processes due to their size and lack of an envelope. Higher kGy dose levels may increase the effectiveness of inactivation for these viruses, although at such levels the performance of the animal serum being irradiated may be adversely impacted.

Gamma-irradiation can effectively mitigate the risk of introducing other potential contaminants of bovine serum, including Cache Valley virus, blue tongue virus, and epizootic hemorrhagic disease virus. Like the parvoviruses, however, other relatively small non-enveloped viruses of the calicivirus, picornavirus, polyomavirus, and circovirus families may represent cases where gamma irradiation is less effective at the doses normally applied. Other means of mitigating the risk associated with these viruses may need to be considered.

< This information was excerpted in part from Nims, et al. Biologicals (2011) >


Information sources: Daley et al., FOCUS 20(3):86-88, 1998; Wyatt et al. BioPharm 1993: 6(4):34-40; Purtel et al., 2006; Hanson and Foster, Art to Science 16:1-7, 1997; Hyclone Labs Art to Science 12(2): 1-6, 1993; Gauvin and Nims 2010; Plavsic et al. BioPharm 2001: 14(4):32-36.

Small, non-enveloped viruses: number 1 threat to biologics manufacture

by Dr. Ray Nims

Perhaps surprisingly, few types of viruses have infected biologics manufacture since the 1980s when the first recombinant proteins began to be produced in mammalian cells. While the list of contaminating viruses has included some relatively large enveloped and non-enveloped viruses (Reovirus type 2, epizootic hemorrhagic disease virus, Cache Valley virus, human adenovirus), by far the most problematic contaminants have been the small non-enveloped viruses. Why? For the most part, the contaminations involving the larger viruses have been attributed to the use of non-gamma irradiated bovine serum or to operators conducting open vessel manipulations. Remediating the manufacturing processes to include gamma irradiation of the serum (or elimination of the use of serum altogether), and eliminating wherever possible open vessel operations should mitigate the risk of experiencing these viruses.

Now we come to the small non-enveloped viruses, the real problem. Foremost among these has been murine minute virus (MMV). This 20-25 nm non-enveloped parvovirus has infected biologics manufacturing processes using Chinese hamster cell substrates on at least four occasions, affecting at least three different manufacturers (Genentech, Amgen, and Merrimack). In each case, the source of the contamination has been unclear, making remediation of the processes difficult. Due to the ability of these viruses to survive on surfaces and their resistance to inactivation by detergents and solvents, eliminating the agent from contaminated facilities may require drastic measures such as fumigation with vaporous hydrogen peroxide .

A second problem virus is the 27-40 nm non-enveloped calicivirus, vesivirus 2117. This is the virus that was found to have infected the Genzyme Allston manufacturing facility in 2009. The same virus had appeared already once in the past, at a manufacturing facility in Germany. Both of the infected processes involved Chinese hamster production cells and both involved the use of bovine serum at some point in the manufacturing process. Whether or not the animal-derived material was the actual source of the infection was not proven in either case. Unfortunately, if the source was the bovine serum, gamma irradiation probably would not mitigate the risk, as gamma irradiation is less effective for inactivating the smaller non-enveloped viruses. This is another virus that may be able to survive on facility surfaces. As in the case with MMV, ridding a manufacturing facility of vesivirus may require entire facility fumigation with vaporous hydrogen peroxide, as was done at Genzyme.

Another problem virus is the 17-20 nm porcine circovirus that was found to contaminate a rotavirus vaccine in 2010. This virus was thought to have originated in contaminated porcine trypsin used in the manufacturing process. Wouldn’t this contaminant have shown up in the raw material testing done for the trypsin, or in the extensive cell bank testing required for vaccine production substrates? The answer is no. The circovirus would not have been detected using the 9CFR-based detection methods used for trypsin at this time (and at present). And the required testing for cell banks used to produce vaccines would not have detected this particular virus. To make matters worse, gamma irradiation of the trypsin would not be expected to inactivate this virus. How can we mitigate the risk of this virus going forward? As described in a previous posting, manufacturers may need to apply specific nucleic acid tests for the circovirus as part of the raw material release process for trypsin.

These and other small non-enveloped viruses represent the greatest risk for biologics manufacturing because they are more difficult to inactivate in raw materials, and more difficult to eradicate from the facility once infected, and because the source of the infection is not always clear. There must be analogous small-non-enveloped bacteriophage lurking out there that represent, for the same reasons, special threats to the fermentation industry.

Fry those mollicutes!

By Dr. Ray Nims

It is not only viruses that may be introduced into biologics manufactured in mammalian cells using bovine sera in upstream cell growth processes. The other real concern is the introduction of mollicutes (mycoplasmas and acholeplasmas). Mollicutes, like viruses, are able to pass through the filters (including 0.2 micron pore size) used to sterilize process solutions. Because of this, filter sterilization will not assure mitigation of the risk of introducing a mollicute through use of contaminated bovine or other animal sera in upstream manufacturing processes.

Does mycoplasma contamination of biologics occur as a result of use of contaminated sera? The answer is yes. Most episodes are not reported to the public domain, but occasionally we hear of such occurrences. Dehghani and coworkers reported the occurrence of a contamination with M. mycoides mycoides bovine group 7 that was proven to have originated in the specific bovine serum used in the upstream process (Case studies of mycoplasma contamination in CHO cell cultures. Proceedings from the PDA Workshop on Mycoplasma Contamination by Plant Peptones. Pharmaceutical Drug Association, Bethesda, MD. 2007, pp. 53-59). Contamination with M. arginini and Acholeplasma laidlawii attributed to use of specific contaminated lots of bovine serum have also occurred.

Fortunately, the risk of introducing an adventitious mollicute into a biologics manufacturing process utilizing a mammalian cell substrate may be mitigated by gamma-irradiating the animal serum prior to use. This may be done in the original containers while the serum is frozen. Unlike the case for viruses, in which the efficacy of irradiation for inactivation may depend upon the size of the virus, mollicute inactivation by gamma irradatiion has been found to be highly effective (essentially complete), regardless of the species of molicute. The radiation doses required for inactivation are relatively low compared to those required for viruses (e.g., 10 kGy or less, compared to 25-45 kGy for viruses). The gamma irradiation that is performed by serum vendors is typically in the range of 25-40 kGy. This level of radiation is more than adequate to assure complete inactivation of any mollicutes that may be present in the serum. For instance, irradiation of calf serum at 26-34 kGy resulted in ≥6 log10 inactivation of M. orale, M. pneumoniae, and M. hyorhinis. In the table below I have assembled the data available on inactivation of mollicutes in frozen serum by gamma-irradiation.

So, the good news is that gamma irradiation of animal serum that is performed to mitigate the risk of introducing a viral contaminant will also mitigate the risk of introducing a mollicute contaminant. If the upstream manufacturing process cannot be engineered to avoid use of animal serum, the next best option is to validate the use of gamma irradiated serum in the process.  In fact, the EMEA Note for guidance on the use of bovine serum in the manufacture of human biological medicinal products strongly recommends the inactivation of serum using a validated and efficacious treatment, and states that the use of non-inactivated serum must be justified.


References: Gauvin and Nims, 2010; Wyatt et al. BioPharm 1993;6(4):34-40; Purtle et al., 2006

Epizootic hemorrhagic disease virus: a future troublemaker?

by Dr. Ray Nims

Epizootic hemorrhagic disease virus (EHDV) is a double-stranded RNA virus of family Reoviridae, genus Orbivirus. This is a non-enveloped virus of approximately 60-80 nm size. This arbovirus is transmitted by a biting midge of genus Culicoides, and is closely related to another Orbivirus, the bluetongue virus. Two serotypes are endemic to cattle in North America (EHDV-1 and EHDV-2); the infections caused tend to be subclinical (asymptomatic) and therefore may go undetected.

Infections in cattle are more prevalent in areas of widespread infection within the local deer population. As shown in the figure below, the geographic distribution of infection of deer populations with EHDV and bluetongue virus includes areas within the high plains and mountain states in which bovine serum production is high (Utah, Kansas, etc.).

From Daniel Mead, Risk of Introduction of New Vector-borne Zoonoses

There have been recent outbreaks of epizootic hemorrhagic disease in cattle in Indiana (2006) as well as other states; in Israel (2006); and in Turkey (2007).

Basis of Concern: EHDV has been isolated previously from a biologics manufacturing process employing a Chinese hamster ovary (CHO) cell substrate (Rabenau et al. Contamination of genetically engineered CHO-cells by epizootic haemorrhagic disease virus (EHDV). Biologicals 21, 207-214, 1993). The infection was presumed, but not proven, to originate from use of a contaminated bovine serum in the manufacturing process.

Regulatory Expectations. EHDV is not mentioned specifically in 9CFR 113.47 (Detection of extraneous viruses by the fluorescent antibody technique as a virus of concern for raw materials of bovine origin), although this regulation requires testing for the closely related bluetongue virus. EHDV would be expected to cause cytopathic effects in Vero cells, one of the detector cells used in the 9CFR 113.47 assay, therefore this assay should detect the virus in grossly contaminated bovine sera.

Mitigating Risk. Elimination of animal-derived materials (esp. bovine sera) from the manufacturing process should reduce the risk of experiencing this virus. If this is not possible, treatment of the sera should be considered. Gamma-irradiation of the frozen serum at the dosages normally used should be effective, judging from results obtained with REO virus, another member of the family Reoviridae (Gauvin, 2009).

Conclusions. EHDV has been found previously to contaminate a biologics manufacturing process employing a CHO-cell substrate. It is therefore a virus of concern for the biopharmaceutical industry. Risk of infection of biological products with EHDV through use of bovine-derived materials such as bovine sera may increase in the event of future outbreaks of this disease in cattle from serum-producing regions of North America or Australia. Risk may be mitigated through implementation of gamma-irradiation of bovine sera and of viral purification processes capable of removing and inactivating non-enveloped viruses such as MMV and REO.

Oops, adventitious viral DNA fragments in a vaccine

by Dr. Ray Nims

On March 22, 2010, a press release from GlaxoSmithKline (GSK) announced that DNA from porcine circovirus had been detected in their rotavirus vaccine. According to GSK, the DNA ”was first detected following work done by a research team in the US using a novel technique for looking for viruses and then confirmed by additional tests conducted by GlaxoSmithKline”. As a result of this finding, the FDA “is recommending that US clinicians and public health professionals temporarily suspend the use of Rotarix as a precautionary measure. The FDA have also stated that they intend to convene an advisory committee, within approximately four to six weeks, to review the available data and make recommendations on rotavirus vaccines licensed in the USA. The FDA will also seek input on the use of new techniques for identifying viruses in vaccines.” The EMEA, on the other hand, does not appear to consider this finding to be a safety concern, citing the fact that porcine circovirus is not infectious for human cells and does not cause disease in humans.

Porcine circovirus

Source: Meat and Livestock Commission, UK

What is porcine circovirus? Porcine circovirus (PCV) is a member of the family Circoviridae, among the smallest of the known animal DNA viruses. It is approximately 17 nm in diameter, non-enveloped, with icosahedral symmetry. The virus was originally identified as a noncytopathic contaminant of the PK-15 porcine kidney cell line (Tischer et al., Zentralblatt Bakt Hyg A 226:153-167, 1974). Like many very small, non-enveloped viruses, PCV represents a challenge for removal and inactivation.

Why is this finding coming to light now, or stated another way, why wasn’t the PCV DNA detected when the vaccine was initially tested and approved for human use? The press release wasn’t specific as to method used. It has subsequently been revealed, however,  that these fragments were detected using sequence-independent amplification (deep sequencing; or as Eric Delwart calls it, metagenomics). The resulting library of amplified sequences is characterized by BLAST searching using identification algorithms. Confirmation in this case was obtained using microarray and PCR analyses. The sequencing techniques have been available for some time, and have proven useful for identification of viruses in an academic setting, though they have not been applied to safety testing of biopharmaceuticals until fairly recently due to the relatively high costs associated with the analyses.

The finding of viral DNA should not be equated with detecting the infectious virus in the product. The sequence-independent amplification, microarray, and virus-specific PCR assays used can detect viral nucleic acid, but as normally performed do not indicate whether infectious virus is present. Generally, with the possible exception of transforming viruses, it is the infectious virus that is of concern, not its DNA. Efforts to assess the presence of intact viral genomic material and of infectious porcine circovirus in this vaccine are most likely underway at this time.

The presence of the PCV viral sequences has provisionally been attributed to the use of porcine trypsin during the culture of the Vero cell substrate in which the vaccine is manufactured. The trypsin used had been gamma-irradiated to inactivate adventitious viruses prior to use. While it would be comforting to believe that the PCV DNA may simply have reflected carryover of non-infectious, lethally-irradiated PCV1 from the trypsin, the fact is that gamma-irradiation is not very effective at inactivating this small, non-enveloped virus (Plavsic and Bolin. Resistence of porcine circovirus to gamma irradiation. Biopharm Int. 14:32-36, 2001). In the case of porcine circovirus, there is little evidence to indicate that the virus is infectious or pathogenic for humans. So regardless of the outcome of the various ongoing studies, it is likely that the use of the GSK rotavirus vaccine will be re-instated after the FDA convenes and discusses the implications of this finding.

I predict that there will be more and more of this kind of revelation in the future as the sequencing techniques display stretches of viral or other contaminant DNA within samples of biopharmaceuticals. I would hate to see revelations like this impede the use of the sequencing technologies going forward, as these technologies are going to be very useful to the industry as rapid detection methods for contaminant identification.

Can Cache Valley Virus Trash Your Manufacturing?

By Dr. Ray Nims

Cache Valley virus is a single-stranded RNA virus of family bunyavirus, genus Bunyavirus. It is enveloped and nominally 80-120 nm in diameter. Cache Valley virus was first isolated in Utah in 1956 and is carried by mosquitoes. It has since been found to be a widespread virus, having been isolated in Texas, Michigan, North Carolina, Indiana, Virginia and Maryland, for example.

source: Nims et al., BioPharm. Int. 21: 89-94, 2008

Basis of Concern. Cache Valley virus is known to infect livestock, causing birth defects. There have been two reports of encephalitic disease in humans attributed to Cache Valley virus. This virus has been isolated from biologics manufacturing processes employing Chinese hamster cell substrates on a number of occasions from 2000 to 2004 (Nims et al., BioPharm. Int. 21: 89-94, 2008). The route of entry of the virus into biologics production processes has not been established with certainty, although the use of contaminated bovine serum is considered to be the most likely source. Thus far the virus has only been known to infect manufacturing processes employing bovine serum.

Regulatory Expectations. Cache Valley virus is not mentioned specifically in any regulatory guidance, as the detection of this virus in biologics production has been reported only within the past decade. It is the intent of the guidance, however, that occurrences of viral contamination in biologics manufacturing be dealt with through implementation of specific testing methods as required to assure detection of future recurrences (e.g., ICH Q5A R1). In addition, it is expected that the route of entry of the virus be established and that the process be remediated so that future recurrences are prevented where possible (e.g., 1997 Points to Consider in the Manufacture and Testing of Monoclonal Antibody Products for Human Use).

Mitigating Risk. Although many Contract Testing laboratories offer rapid nucleic acid-based detection assays for Cache Valley virus, raw material screening for this virus using such assays does not appear to be a viable means of eliminating risk. The industry experience thus far indicates that Cache Valley virus may be a low level, non-homogeneous contaminant of bovine serum. Viral screening performed on one bottle out of a large lot of serum therefore is no guarantee that this virus will not be encountered. Elimination of animal-derived materials (esp. bovine serum) from the manufacturing process may help to reduce the risk of experiencing this virus. Should this not be possible, treatment of the serum or serum-containing media should be considered. Gamma-irradiation has been demonstrated to be effective in inactivating this virus in bovine serum (Gauvin, 2009). UVC treatment of media containing bovine serum also appears to be quite effective at inactivating Cache Valley virus (Weaver, 2009).

Conclusions. Cache Valley virus infects livestock and has been found to contaminate biologics manufacturing processes employing bovine serum. It is a virus of concern for biologics manufacturers employing bovine serum which has not been gamma-irradiated. Risk of infection of biological products with Cache Valley virus through use of bovine serum may be mitigated through implementation of gamma-irradiation of the serum, or UVC- or high-temperature short-time (HTST) treatment of media containing the serum and of viral purification processes capable of removing and inactivating enveloped viruses.